Browsing by Author "Yakoub Hassan Hameduh, Tareq"

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    • Homology modeling in the time of collective and artificial intelligence 

      Yakoub Hassan Hameduh, Tareq; Haddad, Yazan Abdulmajeed Eyadh; Adam, Vojtěch; Heger, Zbyněk (Elsevier Science BV, 2020)
      Homology modeling is a method for building protein 3D structures using protein primary sequence and utilizing prior knowledge gained from structural similarities with other proteins. The homology modeling process is done ...

    • Solvent Accessibility Promotes Rotamer Errors during Protein Modeling with Major Side-Chain Prediction Programs 

      Yakoub Hassan Hameduh, Tareq; Mokrý, Michal; Miller, Andrew David; Heger, Zbyněk; Haddad, Yazan Abdulmajeed Eyadh (American Chemical Society, 2023)
      Side-chain rotamer prediction is one of the most critical late stages in protein 3D structure building. Highly advanced and specialized algorithms (e.g., FASPR, RASP, SCWRL4, and SCWRL4v) optimize this process by use of ...